| 1. Round | 14/08/2016 | The New Saints | - | Aberystwyth Town | 2:1 | ||||
| 2. Round | 20/08/2016 | Llandudno FC | - | The New Saints | 0:5 |  |
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| 3. Round | 28/08/2016 | The New Saints | - | Rhyl FC | 10:0 | ||||
| 4. Round | 31/08/2016 | Cardiff Metropolitan | - | The New Saints | 1:2 | |
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| 5. Round | 04/09/2016 | Airbus UK | - | The New Saints | 1:4 | |
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| 7. Round | 17/09/2016 | The New Saints | - | Bala Town | 5:1 | |
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| 8. Round | 20/09/2016 | Bala Town | - | The New Saints | 0:2 |  |
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| 13. Round | 23/10/2016 | Newtown AFC | - | The New Saints | 0:1 | ||||
| 14. Round | 30/10/2016 | The New Saints | - | Connah's Quay Nomads | 3:0 | |
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| 15. Round | 05/11/2016 | Bangor City | - | The New Saints | 1:2 | ||||
| 16. Round | 18/11/2016 | Carmarthen Town | - | The New Saints | 2:4 | |
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| 17. Round | 25/11/2016 | The New Saints | - | Airbus UK | 4:0 | ||||
| 18. Round | 10/12/2016 | The New Saints | - | Cardiff Metropolitan | 3:1 | ||||
| 22. Round | 14/01/2017 | The New Saints | - | Newtown AFC | 3:3 |
England