| 1. Round | 06/09/1988 | SSC Napoli | - | PAOK Saloniki | 1:0 | ||||
| 1. Round | 05/10/1988 | PAOK Saloniki | - | SSC Napoli | 1:1 | ||||
| 2. Round | 25/10/1988 | 1. FC Lokomotive Leipzig | - | SSC Napoli | 1:1 | ||||
| 2. Round | 08/11/1988 | SSC Napoli | - | 1. FC Lokomotive Leipzig | 2:0 | ||||
| Round of 16 | 22/11/1988 | Girondins Bordeaux | - | SSC Napoli | 0:1 | ||||
| Round of 16 | 06/12/1988 | SSC Napoli | - | Girondins Bordeaux | 0:0 | ||||
| Quarter-finals | 27/02/1989 | Juventus | - | SSC Napoli | 2:0 | ||||
| Quarter-finals | 14/03/1989 | SSC Napoli | - | Juventus | 3:0 aet | ||||
| Semi-finals | 04/04/1989 | SSC Napoli | - | Bayern München | 2:0 | ||||
| Semi-finals | 18/04/1989 | Bayern München | - | SSC Napoli | 2:2 | ||||
| Final | 02/05/1989 | SSC Napoli | - | VfB Stuttgart | 2:1 | ||||
| Final | 16/05/1989 | VfB Stuttgart | - | SSC Napoli | 3:3 |  |
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