| 1. Round | 20/08/2016 | Floriana FC | - | Pembroke Athleta FC | 2:1 | ||||
| 2. Round | 26/08/2016 | Pembroke Athleta FC | - | Balzan FC | 1:2 |  |
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| 3. Round | 10/09/2016 | Valletta FC | - | Pembroke Athleta FC | 5:1 | |
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| 7. Round | 01/10/2016 | Pembroke Athleta FC | - | Tarxien Rainbows | 2:2 | ||||
| 8. Round | 16/10/2016 | St. Andrews FC | - | Pembroke Athleta FC | 4:1 | ||||
| 9. Round | 23/10/2016 | Pembroke Athleta FC | - | Sliema Wanderers | 0:1 | ||||
| 10. Round | 29/10/2016 | Hamrun Spartans | - | Pembroke Athleta FC | 2:1 |
Malta