| 1. Round | 22/07/2012 | Anzhi Makhachkala | - | Kuban Krasnodar (1928-2018) | 2:1 | ||||
| 2. Round | 27/07/2012 | Kuban Krasnodar (1928-2018) | - | Mordovia Saransk | 1:0 | ||||
| 3. Round | 05/08/2012 | Krylia Sovetov | - | Kuban Krasnodar (1928-2018) | 2:1 | ||||
| 5. Round | 20/08/2012 | Spartak Vladikavkaz | - | Kuban Krasnodar (1928-2018) | 2:1 | ||||
| 6. Round | 27/08/2012 | Kuban Krasnodar (1928-2018) | - | Volga Nizhniy Novgorod | 6:2 |  |
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| 13. Round | 26/10/2012 | Kuban Krasnodar (1928-2018) | - | FK Rostov | 1:0 | ||||
| 20. Round | 08/03/2013 | Volga Nizhniy Novgorod | - | Kuban Krasnodar (1928-2018) | 0:2 | ||||
| 21. Round | 16/03/2013 | Kuban Krasnodar (1928-2018) | - | Dinamo Moskva | 1:1 | ||||
| 25. Round | 20/04/2013 | Kuban Krasnodar (1928-2018) | - | Lokomotiv Moskva | 0:0 |  |
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| 26. Round | 28/04/2013 | Kuban Krasnodar (1928-2018) | - | Zenit St. Petersburg | 2:2 | |
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| 27. Round | 04/05/2013 | FK Rostov | - | Kuban Krasnodar (1928-2018) | 0:2 |
Romania