| 6. Round | 15/09/2012 | Tranmere Rovers | - | Coventry City | 2:0 | ||||
| 8. Round | 22/09/2012 | Crawley Town | - | Tranmere Rovers | 2:5 | ||||
| 9. Round | 29/09/2012 | Tranmere Rovers | - | Brentford FC | 1:1 | ||||
| 17. Round | 10/11/2012 | Oldham Athletic | - | Tranmere Rovers | 0:1 | ||||
| 18. Round | 16/11/2012 | Tranmere Rovers | - | Milton Keynes Dons | 0:1 | ||||
| 19. Round | 20/11/2012 | Tranmere Rovers | - | Walsall FC | 0:0 | ||||
| 21. Round | 08/12/2012 | Tranmere Rovers | - | Portsmouth FC | 2:2 | ||||
| 28. Round | 12/01/2013 | Tranmere Rovers | - | Crawley Town | 2:0 | ||||
| 27. Round | 16/01/2013 | Coventry City | - | Tranmere Rovers | 1:0 | ||||
| 33. Round | 15/02/2013 | Tranmere Rovers | - | Shrewsbury Town | 0:2 | ||||
| 37. Round | 09/03/2013 | Tranmere Rovers | - | Oldham Athletic | 1:0 | ||||
| 39. Round | 16/03/2013 | Milton Keynes Dons | - | Tranmere Rovers | 3:0 | ||||
| 46. Round | 27/04/2013 | Tranmere Rovers | - | AFC Bournemouth | 0:0 |
England