| 33. Round | 16/02/2013 | Yeovil Town | - | Scunthorpe United | 3:0 | ||||
| 34. Round | 23/02/2013 | Scunthorpe United | - | Hartlepool United | 1:2 | ||||
| 35. Round | 26/02/2013 | Scunthorpe United | - | Stevenage FC | 1:0 | ||||
| 36. Round | 02/03/2013 | Brentford FC | - | Scunthorpe United | 1:0 | ||||
| 37. Round | 09/03/2013 | Scunthorpe United | - | Coventry City | 1:2 | ||||
| 39. Round | 16/03/2013 | Notts County | - | Scunthorpe United | 1:0 | ||||
| 40. Round | 23/03/2013 | Scunthorpe United | - | Doncaster Rovers | 2:3 | ||||
| 41. Round | 29/03/2013 | Scunthorpe United | - | Leyton Orient | 2:1 | ||||
| 42. Round | 01/04/2013 | AFC Bournemouth | - | Scunthorpe United | 1:0 | ||||
| 44. Round | 13/04/2013 | Scunthorpe United | - | Walsall FC | 1:1 | ||||
| 38. Round | 16/04/2013 | Bury FC | - | Scunthorpe United | 2:1 | ||||
| 46. Round | 27/04/2013 | Scunthorpe United | - | Swindon Town | 3:1 |
Ireland