| 19. Round | 22/01/2011 | FC Carl Zeiss Jena | - | VfB Stuttgart II | 1:1 | ||||
| 22. Round | 29/01/2011 | 1. FC Saarbrücken | - | FC Carl Zeiss Jena | 1:3 | ||||
| 23. Round | 05/02/2011 | FC Carl Zeiss Jena | - | SV Sandhausen | 3:0 |  |
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| 24. Round | 11/02/2011 | Bayern München II | - | FC Carl Zeiss Jena | 1:2 |  |
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| 25. Round | 19/02/2011 | FC Carl Zeiss Jena | - | SV Wehen Wiesbaden | 1:0 | ||||
| 27. Round | 05/03/2011 | FC Carl Zeiss Jena | - | Rot Weiss Ahlen | 3:3 | ||||
| 28. Round | 12/03/2011 | VfR Aalen | - | FC Carl Zeiss Jena | 2:1 | ||||
| 29. Round | 19/03/2011 | FC Carl Zeiss Jena | - | Rot-Weiß Erfurt | 1:3 | |
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| 26. Round | 26/03/2011 | Jahn Regensburg | - | FC Carl Zeiss Jena | 0:0 | ||||
| 30. Round | 02/04/2011 | Hansa Rostock | - | FC Carl Zeiss Jena | 2:1 | ||||
| 31. Round | 05/04/2011 | FC Carl Zeiss Jena | - | TuS Koblenz | 2:2 | |
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| 32. Round | 09/04/2011 | Werder Bremen II | - | FC Carl Zeiss Jena | 0:0 | ||||
| 33. Round | 16/04/2011 | FC Carl Zeiss Jena | - | SpVgg Unterhaching | 1:2 | ||||
| 34. Round | 19/04/2011 | SV Babelsberg 03 | - | FC Carl Zeiss Jena | 4:1 | ||||
| 35. Round | 23/04/2011 | FC Carl Zeiss Jena | - | Wacker Burghausen | 1:0 |
Germany