1. Round | 09/08/2016 | Deportivo Lara | - | Atlético Junior | 1:3 | ||||
2. Round | 24/08/2016 | Blooming | - | Atlético Junior | 0:2 | ||||
Round of 16 | 21/09/2016 | Montevideo Wanderers | - | Atlético Junior | 0:0 | ||||
Round of 16 | 28/09/2016 | Atlético Junior | - | Montevideo Wanderers | 4:3 pso |