| 1. Round | 01/10/2016 | NorthEast United FC | - | Kerala Blasters | 1:0 | ||||
| 1. Round | 04/10/2016 | NorthEast United FC | - | FC Goa | 2:0 | ||||
| 1. Round | 07/10/2016 | Mumbai City FC | - | NorthEast United FC | 1:0 | ||||
| 1. Round | 12/10/2016 | FC Pune City | - | NorthEast United FC | 0:1 | ||||
| 1. Round | 15/10/2016 | Delhi Dynamos FC | - | NorthEast United FC | 1:1 | ||||
| 1. Round | 20/10/2016 | NorthEast United FC | - | Chennaiyin FC | 0:1 | ||||
| 1. Round | 28/10/2016 | NorthEast United FC | - | Atlético de Kolkata | 1:2 | ||||
| 2. Round | 05/11/2016 | NorthEast United FC | - | Mumbai City FC | 0:1 | ||||
| 2. Round | 11/11/2016 | FC Goa | - | NorthEast United FC | 2:1 |  |
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| 2. Round | 22/11/2016 | NorthEast United FC | - | FC Pune City | 1:0 | ||||
| 2. Round | 30/11/2016 | NorthEast United FC | - | Delhi Dynamos FC | 2:1 | ||||
| 3. Round | 04/12/2016 | Kerala Blasters | - | NorthEast United FC | 1:0 |
India