| 1. Round | 17/08/2008 | KRC Genk | - | Germinal Beerschot | 1:1 | ||||
| 2. Round | 23/08/2008 | Germinal Beerschot | - | FCV Dender EH | 1:1 | ||||
| 8. Round | 18/10/2008 | Germinal Beerschot | - | Sporting Charleroi | 1:2 |  |
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| 10. Round | 02/11/2008 | Germinal Beerschot | - | RSC Anderlecht | 1:3 | ||||
| 11. Round | 09/11/2008 | Germinal Beerschot | - | Standard Liège | 1:3 | ||||
| 23. Round | 21/02/2009 | KAA Gent | - | Germinal Beerschot | 1:3 | ||||
| 25. Round | 07/03/2009 | Sporting Charleroi | - | Germinal Beerschot | 0:0 | ||||
| 28. Round | 05/04/2009 | Standard Liège | - | Germinal Beerschot | 3:1 | ||||
| 29. Round | 11/04/2009 | Germinal Beerschot | - | SV Zulte Waregem | 1:2 | ||||
| 32. Round | 02/05/2009 | Excelsior Mouscron | - | Germinal Beerschot | 3:1 | ||||
| 33. Round | 08/05/2009 | Germinal Beerschot | - | KV Mechelen | 3:1 |  |
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| 34. Round | 16/05/2009 | AFC Tubize | - | Germinal Beerschot | 1:0 |
Rwanda