| 3. Round | 04/09/2016 | CDA Navalcarnero | - | SD Leioa | 0:2 | ||||
| 5. Round | 18/09/2016 | CDA Navalcarnero | - | Rayo Majadahonda | 1:1 | ||||
| 6. Round | 25/09/2016 | CD Toledo | - | CDA Navalcarnero | 0:0 | ||||
| 8. Round | 09/10/2016 | SD Zamudio | - | CDA Navalcarnero | 1:1 | ||||
| 9. Round | 16/10/2016 | CDA Navalcarnero | - | Athletic Club B | 0:1 | ||||
| 10. Round | 23/10/2016 | Barakaldo CF | - | CDA Navalcarnero | 3:2 | ||||
| 16. Round | 27/11/2016 | CDA Navalcarnero | - | CD Mensajero | 1:1 | ||||
| 17. Round | 03/12/2016 | Real Madrid Castilla | - | CDA Navalcarnero | 1:1 | ||||
| 18. Round | 11/12/2016 | CDA Navalcarnero | - | Real Sociedad B | 1:1 | ||||
| 19. Round | 18/12/2016 | Real Unión | - | CDA Navalcarnero | 1:3 |
Spain