| 1. Round | 11/07/2016 | Spartak Nalchik | - | Kuban Krasnodar (1928-2018) | 0:0 | ||||
| 2. Round | 16/07/2016 | Kuban Krasnodar (1928-2018) | - | Luch-Energiya Vladivostok | 1:1 | ||||
| 3. Round | 23/07/2016 | Spartak Moskva 2 | - | Kuban Krasnodar (1928-2018) | 1:0 | ||||
| 4. Round | 27/07/2016 | Kuban Krasnodar (1928-2018) | - | FK Tosno | 1:1 | ||||
| 5. Round | 31/07/2016 | FK Tambov | - | Kuban Krasnodar (1928-2018) | 0:0 | ||||
| 6. Round | 06/08/2016 | Kuban Krasnodar (1928-2018) | - | SKA-Khabarovsk | 0:2 | ||||
| 7. Round | 13/08/2016 | FK Khimki | - | Kuban Krasnodar (1928-2018) | 4:1 |  |
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| 8. Round | 17/08/2016 | Kuban Krasnodar (1928-2018) | - | Sibir Novosibirsk | 1:1 | ||||
| 9. Round | 21/08/2016 | Mordovia Saransk | - | Kuban Krasnodar (1928-2018) | 1:3 | ||||
| 10. Round | 28/08/2016 | FK Neftekhimik | - | Kuban Krasnodar (1928-2018) | 1:4 | ||||
| 12. Round | 10/09/2016 | Kuban Krasnodar (1928-2018) | - | Sokol Saratov | 0:0 | ||||
| 13. Round | 17/09/2016 | Kuban Krasnodar (1928-2018) | - | Shinnik Yaroslavl | 0:1 | ||||
| 14. Round | 26/09/2016 | FK Tyumen | - | Kuban Krasnodar (1928-2018) | 2:0 | |
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| 15. Round | 01/10/2016 | Kuban Krasnodar (1928-2018) | - | Enisey Krasnoyarsk | 2:1 |
Moldova
Romania