| 14. Round | 18/10/2016 | Milton Keynes Dons | - | Bristol Rovers | 3:3 | ||||
| 15. Round | 22/10/2016 | Milton Keynes Dons | - | Southend United | 0:3 | ||||
| 16. Round | 29/10/2016 | Sheffield United | - | Milton Keynes Dons | 2:1 |  |
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| 17. Round | 12/11/2016 | Milton Keynes Dons | - | Walsall FC | 1:1 | ||||
| 18. Round | 19/11/2016 | Bristol Rovers | - | Milton Keynes Dons | 0:0 | ||||
| 19. Round | 22/11/2016 | Milton Keynes Dons | - | Chesterfield FC | 2:3 | ||||
| 22. Round | 17/12/2016 | Gillingham FC | - | Milton Keynes Dons | 1:0 |
Scotland