| 1. Round | 13/07/2012 | MŠK Žilina | - | Spartak Myjava | 4:1 | ||||
| 4. Round | 04/08/2012 | MŠK Žilina | - | FK Senica | 2:0 | ||||
| 6. Round | 18/08/2012 | MŠK Žilina | - | MFK Ružomberok | 0:0 | ||||
| 7. Round | 25/08/2012 | Zlaté Moravce | - | MŠK Žilina | 1:0 | ||||
| 8. Round | 01/09/2012 | MŠK Žilina | - | FC Nitra | 1:1 | ||||
| 10. Round | 22/09/2012 | MŠK Žilina | - | 1. FC Tatran Prešov | 3:0 | ||||
| 12. Round | 06/10/2012 | Spartak Myjava | - | MŠK Žilina | 1:1 |
Peru