| 2. Round | 17/04/2024 | Pirata | - | FC San Marcos | 0:2 |  |
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| 4. Round | 29/04/2024 | FC San Marcos | - | Carlos Stein | 3:1 | |
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| 5. Round | 07/05/2024 | AD Agropecuaria | - | FC San Marcos | 0:2 | ||||
| 7. Round | 18/05/2024 | Alianza Universidad | - | FC San Marcos | 3:1 | ||||
| 8. Round | 23/05/2024 | FC San Marcos | - | Llacuabamba | 2:1 | |
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| 18. Round | 21/07/2024 | FC San Marcos | - | Juan Pablo II College | 0:0 |
Colombia