| 12. Round | 13/10/2012 | Rochdale AFC | - | Morecambe FC | 1:2 | ||||
| 13. Round | 20/10/2012 | Morecambe FC | - | Southend United | 1:0 | ||||
| 14. Round | 23/10/2012 | Rotherham United | - | Morecambe FC | 2:1 | ||||
| 15. Round | 27/10/2012 | Torquay United | - | Morecambe FC | 1:0 | ||||
| 16. Round | 06/11/2012 | Morecambe FC | - | Accrington Stanley | 0:0 | ||||
| 17. Round | 10/11/2012 | Morecambe FC | - | Barnet FC | 4:1 |  |
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| 19. Round | 20/11/2012 | Northampton Town | - | Morecambe FC | 3:0 | ||||
| 20. Round | 24/11/2012 | Morecambe FC | - | AFC Wimbledon | 3:1 | |
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| 21. Round | 08/12/2012 | Wycombe Wanderers | - | Morecambe FC | 2:2 | ||||
| 22. Round | 15/12/2012 | Morecambe FC | - | Oxford United | 1:1 | ||||
| 24. Round | 26/12/2012 | Fleetwood Town | - | Morecambe FC | 1:0 |
England
