| 1. Round | 20/08/2006 | AE Lárissa | - | Aris Saloniki | 1:1 | ||||
| 2. Round | 27/08/2006 | Aris Saloniki | - | AO Kerkyra | 0:0 | ||||
| 3. Round | 10/09/2006 | AO Egaleo | - | Aris Saloniki | 1:1 | ||||
| 4. Round | 16/09/2006 | Aris Saloniki | - | Ionikos Nikea | 1:0 | ||||
| 5. Round | 24/09/2006 | Skoda Xanthi | - | Aris Saloniki | 1:1 | ||||
| 6. Round | 30/09/2006 | Aris Saloniki | - | Panionios GSS | 2:2 | ||||
| 7. Round | 21/10/2006 | Aris Saloniki | - | PAOK Saloniki | 0:0 | ||||
| 8. Round | 29/10/2006 | OFI Heraklion | - | Aris Saloniki | 1:0 | ||||
| 19. Round | 28/01/2007 | Ionikos Nikea | - | Aris Saloniki | 0:1 | ||||
| 22. Round | 17/02/2007 | PAOK Saloniki | - | Aris Saloniki | 1:0 |
Germany