| 2. Round | 17/04/2024 | Pirata | - | FC San Marcos | 0:2 | ||||
| 4. Round | 29/04/2024 | FC San Marcos | - | Carlos Stein | 3:1 |  |
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| 5. Round | 07/05/2024 | AD Agropecuaria | - | FC San Marcos | 0:2 | ||||
| 7. Round | 18/05/2024 | Alianza Universidad | - | FC San Marcos | 3:1 | ||||
| 8. Round | 23/05/2024 | FC San Marcos | - | Llacuabamba | 2:1 | ||||
| 9. Round | 30/05/2024 | Juan Pablo II College | - | FC San Marcos | 3:2 | ||||
| 11. Round | 09/06/2024 | FC San Marcos | - | Pirata | 2:1 | ||||
| 13. Round | 24/06/2024 | Carlos Stein | - | FC San Marcos | 1:2 | |
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| 14. Round | 28/06/2024 | FC San Marcos | - | AD Agropecuaria | 6:0 |  |
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| 16. Round | 07/07/2024 | FC San Marcos | - | Alianza Universidad | 1:2 | ||||
| 17. Round | 13/07/2024 | Llacuabamba | - | FC San Marcos | 2:2 | |
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| 18. Round | 21/07/2024 | FC San Marcos | - | Juan Pablo II College | 0:0 |
Peru