| 11. Round | 16/10/2009 | NK Inter Zaprešić | - | NK Zadar | 4:3 | ||||
| 13. Round | 30/10/2009 | NK Inter Zaprešić | - | NK Istra 1961 | 1:0 |  |
|||
| 14. Round | 07/11/2009 | NK Inter Zaprešić | - | HNK Rijeka | 3:0 |  |
|||
| 15. Round | 21/11/2009 | Lokomotiva Zagreb | - | NK Inter Zaprešić | 0:1 | ||||
| 18. Round | 27/02/2010 | HNK Cibalia | - | NK Inter Zaprešić | 2:0 | ||||
| 20. Round | 13/03/2010 | HNK Šibenik | - | NK Inter Zaprešić | 0:0 | ||||
| 21. Round | 19/03/2010 | NK Inter Zaprešić | - | NK Karlovac | 0:1 | |
|||
| 26. Round | 17/04/2010 | NK Zadar | - | NK Inter Zaprešić | 0:1 | |
|||
| 27. Round | 23/04/2010 | NK Inter Zaprešić | - | Slaven Belupo | 2:0 | ||||
| 28. Round | 01/05/2010 | NK Istra 1961 | - | NK Inter Zaprešić | 2:0 | ||||
| 29. Round | 08/05/2010 | HNK Rijeka | - | NK Inter Zaprešić | 3:1 | ||||
| 30. Round | 13/05/2010 | NK Inter Zaprešić | - | Lokomotiva Zagreb | 4:2 |
Croatia