| 1. Round | 18/09/2008 | MŠK Žilina | - | Levski Sofia | 1:1 | ||||
| 1. Round | 02/10/2008 | Levski Sofia | - | MŠK Žilina | 0:1 | ||||
| Group F | 23/10/2008 | MŠK Žilina | - | Hamburger SV | 1:2 |  |
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| Group F | 06/11/2008 | AFC Ajax | - | MŠK Žilina | 1:0 | ||||
| Group F | 04/12/2008 | Aston Villa | - | MŠK Žilina | 1:2 |
Slovakia