| 4. Round | 20/08/2016 | Waasland-Beveren | - | KV Mechelen | 2:2 | ||||
| 5. Round | 27/08/2016 | KV Oostende | - | Waasland-Beveren | 2:1 | ||||
| 6. Round | 09/09/2016 | Waasland-Beveren | - | Club Brugge KV | 1:0 | ||||
| 7. Round | 17/09/2016 | Sint-Truidense VV | - | Waasland-Beveren | 4:1 | ||||
| 8. Round | 24/09/2016 | Waasland-Beveren | - | Sporting Lokeren | 1:1 | ||||
| 9. Round | 01/10/2016 | KVC Westerlo | - | Waasland-Beveren | 1:0 | ||||
| 13. Round | 30/10/2016 | Waasland-Beveren | - | RSC Anderlecht | 2:1 | ||||
| 14. Round | 06/11/2016 | KAA Gent | - | Waasland-Beveren | 2:0 | ||||
| 15. Round | 19/11/2016 | Waasland-Beveren | - | KV Kortrijk | 1:1 |  |
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| 16. Round | 26/11/2016 | Waasland-Beveren | - | Sporting Charleroi | 0:1 | ||||
| 17. Round | 03/12/2016 | SV Zulte Waregem | - | Waasland-Beveren | 1:1 | ||||
| 19. Round | 17/12/2016 | KV Mechelen | - | Waasland-Beveren | 2:0 | ||||
| 20. Round | 20/12/2016 | Waasland-Beveren | - | Sint-Truidense VV | 3:1 | ||||
| 21. Round | 26/12/2016 | Sporting Lokeren | - | Waasland-Beveren | 0:0 | ||||
| 30. Round | 12/03/2017 | RSC Anderlecht | - | Waasland-Beveren | 3:0 | |
France