| 19. Round | 28/01/2006 | SC Freiburg | - | Dynamo Dresden | 1:0 | ||||
| 20. Round | 05/02/2006 | Erzgebirge Aue | - | SC Freiburg | 1:0 | ||||
| 21. Round | 12/02/2006 | SC Freiburg | - | Kickers Offenbach | 2:0 | ||||
| 22. Round | 17/02/2006 | Karlsruher SC | - | SC Freiburg | 1:1 | ||||
| 23. Round | 27/02/2006 | SC Freiburg | - | TSV 1860 München | 2:1 | ||||
| 25. Round | 12/03/2006 | SC Freiburg | - | Eintracht Braunschweig | 1:0 | ||||
| 24. Round | 16/03/2006 | SpVgg Unterhaching | - | SC Freiburg | 1:0 | ||||
| 26. Round | 19/03/2006 | 1. FC Saarbrücken | - | SC Freiburg | 2:1 | ||||
| 27. Round | 27/03/2006 | SC Freiburg | - | VfL Bochum | 0:0 | ||||
| 28. Round | 31/03/2006 | Energie Cottbus | - | SC Freiburg | 2:1 | ||||
| 29. Round | 09/04/2006 | SC Freiburg | - | SC Paderborn 07 | 1:0 |  |
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| 30. Round | 16/04/2006 | LR Ahlen | - | SC Freiburg | 0:0 | |
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| 31. Round | 23/04/2006 | SC Freiburg | - | Sportfreunde Siegen | 2:2 | ||||
| 32. Round | 03/05/2006 | Hansa Rostock | - | SC Freiburg | 1:2 |  |
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| 33. Round | 07/05/2006 | Alemannia Aachen | - | SC Freiburg | 0:1 | ||||
| 34. Round | 14/05/2006 | SC Freiburg | - | SpVgg Greuther Fürth | 1:0 | |
France