| 1. Round | 07/08/2016 | SpVgg Greuther Fürth | - | TSV 1860 München | 1:0 | ||||
| 2. Round | 14/08/2016 | TSV 1860 München | - | Arminia Bielefeld | 1:0 |  |
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| 3. Round | 27/08/2016 | Karlsruher SC | - | TSV 1860 München | 0:0 | |
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| 4. Round | 12/09/2016 | 1. FC Nürnberg | - | TSV 1860 München | 1:2 | ||||
| 5. Round | 16/09/2016 | TSV 1860 München | - | 1. FC Union Berlin | 1:2 | ||||
| 6. Round | 22/09/2016 | FC St. Pauli | - | TSV 1860 München | 2:2 | |
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| 7. Round | 25/09/2016 | TSV 1860 München | - | Hannover 96 | 0:2 | |
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| 8. Round | 02/10/2016 | Würzburger Kickers | - | TSV 1860 München | 2:0 | ||||
| 9. Round | 16/10/2016 | TSV 1860 München | - | Fortuna Düsseldorf | 1:3 | ||||
| 11. Round | 28/10/2016 | TSV 1860 München | - | Erzgebirge Aue | 6:2 | ||||
| 12. Round | 06/11/2016 | SV Sandhausen | - | TSV 1860 München | 3:2 | ||||
| 13. Round | 21/11/2016 | TSV 1860 München | - | 1. FC Kaiserslautern | 1:1 | |
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| 15. Round | 03/12/2016 | TSV 1860 München | - | Dynamo Dresden | 1:0 |
France