| 24. Round | 22/02/2025 | Persita Tangerang | - | Borneo FC | 1:2 | ||||
| 25. Round | 02/03/2025 | Borneo FC | - | Persis Solo (LI) | 0:1 | ||||
| 26. Round | 06/03/2025 | PSBS Biak | - | Borneo FC | 1:0 | ||||
| 27. Round | 10/03/2025 | Dewa United FC | - | Borneo FC | 0:1 | ||||
| 28. Round | 11/04/2025 | Borneo FC | - | Persib Bandung | 2:2 |  |
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| 29. Round | 18/04/2025 | Borneo FC | - | PSM Makassar | 1:1 | ||||
| 31. Round | 04/05/2025 | Borneo FC | - | Persija Jakarta | 1:0 | ||||
| 33. Round | 18/05/2025 | Borneo FC | - | Persebaya Surabaya | 1:1 | ||||
| 34. Round | 23/05/2025 | Persik Kediri | - | Borneo FC | 1:2 |
Japan