2. Round | 13/08/2016 | FC St. Pauli | - | Eintracht Braunschweig | 0:2 | ||||
3. Round | 28/08/2016 | Dynamo Dresden | - | FC St. Pauli | 1:0 | ||||
4. Round | 10/09/2016 | FC St. Pauli | - | Arminia Bielefeld | 2:1 | ||||
5. Round | 18/09/2016 | Karlsruher SC | - | FC St. Pauli | 1:1 | ||||
6. Round | 22/09/2016 | FC St. Pauli | - | TSV 1860 München | 2:2 | ||||
8. Round | 01/10/2016 | Hannover 96 | - | FC St. Pauli | 2:0 | ||||
9. Round | 14/10/2016 | FC St. Pauli | - | Erzgebirge Aue | 1:2 | ||||
12. Round | 07/11/2016 | Würzburger Kickers | - | FC St. Pauli | 1:0 | ||||
13. Round | 20/11/2016 | FC St. Pauli | - | Fortuna Düsseldorf | 0:1 | ||||
15. Round | 02/12/2016 | FC St. Pauli | - | 1. FC Kaiserslautern | 0:0 | ||||
16. Round | 11/12/2016 | SpVgg Greuther Fürth | - | FC St. Pauli | 0:2 | ||||
17. Round | 17/12/2016 | FC St. Pauli | - | VfL Bochum | 1:1 | ||||
20. Round | 12/02/2017 | FC St. Pauli | - | Dynamo Dresden | 2:0 | ||||
25. Round | 18/03/2017 | FC St. Pauli | - | Hannover 96 | 0:0 | ||||
26. Round | 31/03/2017 | Erzgebirge Aue | - | FC St. Pauli | 1:0 | ||||
27. Round | 04/04/2017 | FC St. Pauli | - | SV Sandhausen | 0:0 |