| 1. Round | 16/08/1989 | KV Kortrijk | - | KFC Germinal Ekeren | 3:1 |  |
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| 2. Round | 20/08/1989 | KFC Germinal Ekeren | - | KV Mechelen | 0:1 | ||||
| 3. Round | 30/08/1989 | KAA Gent | - | KFC Germinal Ekeren | 2:1 | ||||
| 4. Round | 10/09/1989 | KFC Germinal Ekeren | - | RSC Charleroi | 1:0 | ||||
| 5. Round | 17/09/1989 | KFC Germinal Ekeren | - | Club Brugge KV | 2:2 | ||||
| 6. Round | 23/09/1989 | Lierse SK (old) | - | KFC Germinal Ekeren | 2:1 | |
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| 7. Round | 01/10/1989 | KFC Germinal Ekeren | - | KSK Beveren | 3:0 |  |
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| 8. Round | 07/10/1989 | RFC Liège | - | KFC Germinal Ekeren | 2:0 | ||||
| 9. Round | 15/10/1989 | KFC Germinal Ekeren | - | KSV Waregem | 3:1 | ||||
| 10. Round | 21/10/1989 | Royal Antwerp FC | - | KFC Germinal Ekeren | 4:1 | ||||
| 11. Round | 05/11/1989 | KFC Germinal Ekeren | - | KRC Mechelen | 2:0 | ||||
| 29. Round | 08/04/1990 | KFC Germinal Ekeren | - | Sporting Lokeren | 2:2 | ||||
| 30. Round | 14/04/1990 | RSC Anderlecht | - | KFC Germinal Ekeren | 2:0 | ||||
| 31. Round | 22/04/1990 | KFC Germinal Ekeren | - | Cercle Brugge | 2:1 | |
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| 32. Round | 28/04/1990 | Sint-Truidense VV | - | KFC Germinal Ekeren | 0:0 | ||||
| 33. Round | 05/05/1990 | KFC Germinal Ekeren | - | K. Beerschot VAV | 0:1 |
Belgium