| 2. Round | 03/08/2008 | HNK Šibenik | - | NK Croatia Sesvete | 0:1 | ||||
| 3. Round | 09/08/2008 | NK Croatia Sesvete | - | Dinamo Zagreb | 0:1 | ||||
| 6. Round | 31/08/2008 | NK Croatia Sesvete | - | HNK Cibalia | 1:1 | ||||
| 15. Round | 16/11/2008 | NK Croatia Sesvete | - | NK Inter Zaprešić | 1:3 | ||||
| 16. Round | 23/11/2008 | HNK Rijeka | - | NK Croatia Sesvete | 2:1 |  |
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| 17. Round | 30/11/2008 | HNK Cibalia | - | NK Croatia Sesvete | 3:1 | ||||
| 18. Round | 07/12/2008 | NK Croatia Sesvete | - | NK Zadar | 3:1 |  |
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| 20. Round | 01/03/2009 | NK Croatia Sesvete | - | NK Zagreb | 1:4 | ||||
| 21. Round | 08/03/2009 | Hajduk Split | - | NK Croatia Sesvete | 1:0 | ||||
| 22. Round | 15/03/2009 | NK Croatia Sesvete | - | Slaven Belupo | 0:0 | ||||
| 24. Round | 05/04/2009 | NK Croatia Sesvete | - | HNK Šibenik | 0:1 | ||||
| 26. Round | 19/04/2009 | NK Croatia Sesvete | - | Dinamo Zagreb | 0:4 | ||||
| 29. Round | 03/05/2009 | HNK Cibalia | - | NK Croatia Sesvete | 3:0 |
Croatia