| 2. Round | 05/08/2006 | NK Varteks | - | NK Međimurje | 3:1 |  |
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| 3. Round | 12/08/2006 | HNK Cibalia | - | NK Varteks | 1:2 | ||||
| 4. Round | 19/08/2006 | NK Varteks | - | Kamen Ingrad | 3:0 | ||||
| 5. Round | 26/08/2006 | NK Zagreb | - | NK Varteks | 3:0 | ||||
| 6. Round | 10/09/2006 | NK Varteks | - | HNK Rijeka | 2:1 | ||||
| 7. Round | 16/09/2006 | Hajduk Split | - | NK Varteks | 3:1 | ||||
| 8. Round | 23/09/2006 | Slaven Belupo | - | NK Varteks | 3:2 | ||||
| 17. Round | 25/11/2006 | HNK Rijeka | - | NK Varteks | 2:2 |  |
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| 18. Round | 02/12/2006 | NK Varteks | - | Hajduk Split | 0:1 |
Croatia