| 12. Round | 15/10/2016 | NK Inter Zaprešić | - | HNK Cibalia | 1:0 | ||||
| 20. Round | 18/12/2016 | Slaven Belupo | - | HNK Cibalia | 4:0 | ||||
| 26. Round | 02/04/2017 | HNK Cibalia | - | HNK Rijeka | 0:3 |  |
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| 28. Round | 14/04/2017 | Hajduk Split | - | HNK Cibalia | 3:0 | ||||
| 29. Round | 21/04/2017 | HNK Cibalia | - | Slaven Belupo | 3:1 | ||||
| 31. Round | 29/04/2017 | Dinamo Zagreb | - | HNK Cibalia | 6:0 | ||||
| 35. Round | 21/05/2017 | HNK Rijeka | - | HNK Cibalia | 4:0 |
Croatia