| 1. Round | 25/07/2009 | NK Croatia Sesvete | - | HNK Šibenik | 1:2 |  |
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| 5. Round | 22/08/2009 | NK Croatia Sesvete | - | NK Istra 1961 | 2:2 | |
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| 6. Round | 29/08/2009 | NK Croatia Sesvete | - | NK Osijek | 1:2 | ||||
| 7. Round | 12/09/2009 | NK Zadar | - | NK Croatia Sesvete | 2:0 | ||||
| 8. Round | 19/09/2009 | NK Croatia Sesvete | - | Slaven Belupo | 1:1 | ||||
| 14. Round | 07/11/2009 | NK Croatia Sesvete | - | HNK Cibalia | 0:3 | ||||
| 17. Round | 05/12/2009 | NK Croatia Sesvete | - | NK Karlovac | 0:3 | ||||
| 19. Round | 06/03/2010 | NK Croatia Sesvete | - | NK Međimurje | 2:1 | ||||
| 20. Round | 13/03/2010 | NK Istra 1961 | - | NK Croatia Sesvete | 1:0 | |
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| 22. Round | 27/03/2010 | NK Croatia Sesvete | - | NK Zadar | 1:2 | ||||
| 25. Round | 14/04/2010 | HNK Rijeka | - | NK Croatia Sesvete | 4:2 | ||||
| 28. Round | 30/04/2010 | NK Croatia Sesvete | - | NK Zagreb | 1:4 | ||||
| 30. Round | 13/05/2010 | NK Croatia Sesvete | - | Hajduk Split | 2:5 |
Croatia