| 18. Round | 05/03/2006 | 1. FC Nürnberg [Youth] | - | Jahn Regensburg [Youth] | 2:1 | ||||
| 20. Round | 18/03/2006 | TSV 1860 München [Youth] | - | Jahn Regensburg [Youth] | 1:1 |  |
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| 21. Round | 26/03/2006 | Jahn Regensburg [Youth] | - | SpVgg Greuther Fürth [Youth] | 0:2 | ||||
| 22. Round | 01/04/2006 | VfB Stuttgart [Youth] | - | Jahn Regensburg [Youth] | 4:1 | ||||
| 23. Round | 09/04/2006 | Jahn Regensburg [Youth] | - | 1899 Hoffenheim [Youth] | 1:0 | ||||
| 24. Round | 23/04/2006 | Jahn Regensburg [Youth] | - | Bayern München [Youth] | 1:4 | ||||
| 15. Round | 27/04/2006 | Jahn Regensburg [Youth] | - | Eintracht Frankfurt [Youth] | 1:1 |  |
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| 25. Round | 07/05/2006 | Stuttgarter Kickers [Youth] | - | Jahn Regensburg [Youth] | 3:3 | |
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| 26. Round | 14/05/2006 | Jahn Regensburg [Youth] | - | 1. FC Kaiserslautern [Youth] | 2:1 |
Germany