| 1. Round | 12/08/2016 | Deportivo Municipal | - | Atlético Nacional | 0:5 |  |
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| 2. Round | 24/08/2016 | Bolívar | - | Atlético Nacional | 1:1 | ||||
| Round of 16 | 21/09/2016 | Sol de América | - | Atlético Nacional | 1:1 |  |
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| Quarter-finals | 20/10/2016 | Coritiba - PR | - | Atlético Nacional | 1:1 |  |
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| Quarter-finals | 27/10/2016 | Atlético Nacional | - | Coritiba - PR | 3:1 | ||||
| Semi-finals | 01/11/2016 | Cerro Porteño | - | Atlético Nacional | 1:1 | |
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| Semi-finals | 25/11/2016 | Atlético Nacional | - | Cerro Porteño | 0:0 |
Colombia
