| 1. Round | 19/08/2006 | VfB Stuttgart [Youth] | - | 1. FC Nürnberg [Youth] | 5:0 | ||||
| 2. Round | 26/08/2006 | 1. FC Kaiserslautern [Youth] | - | VfB Stuttgart [Youth] | 0:1 | ||||
| 3. Round | 03/09/2006 | VfB Stuttgart [Youth] | - | TSV 1860 München [Youth] | 1:1 |  |
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| 5. Round | 16/09/2006 | VfB Stuttgart [Youth] | - | SSV Reutlingen [Youth] | 0:1 | ||||
| 6. Round | 23/09/2006 | SSV Ulm 1846 [Youth] | - | VfB Stuttgart [Youth] | 1:3 | ||||
| 7. Round | 01/10/2006 | VfB Stuttgart [Youth] | - | SC Freiburg [Youth] | 2:2 |  |
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| 8. Round | 15/10/2006 | Wacker Burghausen [Youth] | - | VfB Stuttgart [Youth] | 2:0 | ||||
| 9. Round | 28/10/2006 | VfB Stuttgart [Youth] | - | SpVgg Greuther Fürth [Youth] | 2:3 | ||||
| 10. Round | 05/11/2006 | Bayern München [Youth] | - | VfB Stuttgart [Youth] | 1:1 | |
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| 11. Round | 11/11/2006 | 1. FSV Mainz 05 [Youth] | - | VfB Stuttgart [Youth] | 1:0 | ||||
| 12. Round | 25/11/2006 | VfB Stuttgart [Youth] | - | Karlsruher SC [Youth] | 1:1 | |
Germany