| 3. Round | 29/07/2016 | 1. FC Schweinfurt 05 | - | 1. FC Nürnberg II | 1:2 | ||||
| 4. Round | 02/08/2016 | 1. FC Nürnberg II | - | SpVgg Bayern Hof | 3:2 |  |
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| 5. Round | 05/08/2016 | 1. FC Nürnberg II | - | FV Illertissen | 1:2 | ||||
| 6. Round | 13/08/2016 | SV Seligenporten | - | 1. FC Nürnberg II | 1:4 | |
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| 7. Round | 20/08/2016 | 1. FC Nürnberg II | - | Wacker Burghausen | 1:2 | ||||
| 8. Round | 28/08/2016 | TSV Buchbach | - | 1. FC Nürnberg II | 2:5 | ||||
| 9. Round | 03/09/2016 | 1. FC Nürnberg II | - | SpVgg Unterhaching | 1:4 | ||||
| 10. Round | 11/09/2016 | FC Ingolstadt 04 II | - | 1. FC Nürnberg II | 0:3 | ||||
| 11. Round | 16/09/2016 | 1. FC Nürnberg II | - | SpVgg Bayreuth | 0:5 | ||||
| 12. Round | 24/09/2016 | TSV 1860 München II | - | 1. FC Nürnberg II | 1:4 | ||||
| 13. Round | 01/10/2016 | 1. FC Nürnberg II | - | TSV 1860 Rosenheim | 2:2 | ||||
| 15. Round | 15/10/2016 | 1. FC Nürnberg II | - | FC Memmingen | 2:2 | ||||
| 16. Round | 23/10/2016 | SpVgg Greuther Fürth II | - | 1. FC Nürnberg II | 0:1 | ||||
| 17. Round | 30/10/2016 | 1. FC Nürnberg II | - | Bayern München II | 3:3 | ||||
| 18. Round | 05/11/2016 | 1. FC Nürnberg II | - | FC Augsburg II | 1:4 | ||||
| 19. Round | 12/11/2016 | SV Schalding-Heining | - | 1. FC Nürnberg II | 4:3 | |
Germany