| 1. Round | 30/07/2016 | 1. FC Köln II | - | Borussia Dortmund II | 1:4 | ||||
| 2. Round | 05/08/2016 | FC Schalke 04 II | - | 1. FC Köln II | 0:1 | ||||
| 6. Round | 26/08/2016 | 1. FC Köln II | - | Rot-Weiß Oberhausen | 1:2 | ||||
| 8. Round | 10/09/2016 | 1. FC Köln II | - | SC Wiedenbrück | 1:3 | ||||
| 13. Round | 15/10/2016 | Rot-Weiss Essen | - | 1. FC Köln II | 5:2 | ||||
| 14. Round | 22/10/2016 | 1. FC Köln II | - | SV Rödinghausen | 0:3 | ||||
| 7. Round | 26/10/2016 | TSG Sprockhövel | - | 1. FC Köln II | 0:5 | ||||
| 15. Round | 30/10/2016 | Rot Weiss Ahlen | - | 1. FC Köln II | 1:1 | ||||
| 16. Round | 05/11/2016 | 1. FC Köln II | - | SC Verl | 2:0 | ||||
| 17. Round | 12/11/2016 | Alemannia Aachen | - | 1. FC Köln II | 3:2 | ||||
| 3. Round | 19/11/2016 | 1. FC Köln II | - | Bor. Mönchengladbach II | 1:1 | ||||
| 18. Round | 26/11/2016 | Borussia Dortmund II | - | 1. FC Köln II | 2:1 | ||||
| 31. Round | 29/04/2017 | SV Rödinghausen | - | 1. FC Köln II | 2:2 | ||||
| 33. Round | 13/05/2017 | SC Verl | - | 1. FC Köln II | 1:1 | ||||
| 34. Round | 20/05/2017 | 1. FC Köln II | - | Alemannia Aachen | 1:2 |
Australia
Croatia