| 3. Round | 10/08/2016 | Werder Bremen II | - | FSV Zwickau | 1:3 | ||||
| 4. Round | 13/08/2016 | SC Paderborn 07 | - | Werder Bremen II | 1:2 |  |
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| 5. Round | 26/08/2016 | Werder Bremen II | - | VfL Osnabrück | 4:2 | ||||
| 6. Round | 10/09/2016 | MSV Duisburg | - | Werder Bremen II | 1:0 | |
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| 7. Round | 17/09/2016 | Werder Bremen II | - | 1. FSV Mainz 05 II | 2:1 | ||||
| 8. Round | 21/09/2016 | 1. FC Magdeburg | - | Werder Bremen II | 2:0 | ||||
| 9. Round | 24/09/2016 | Preußen Münster | - | Werder Bremen II | 4:0 | ||||
| 10. Round | 01/10/2016 | Werder Bremen II | - | SV Wehen Wiesbaden | 0:1 | ||||
| 11. Round | 15/10/2016 | Holstein Kiel | - | Werder Bremen II | 3:1 |  |
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| 13. Round | 29/10/2016 | Chemnitzer FC | - | Werder Bremen II | 1:1 | ||||
| 22. Round | 11/02/2017 | FSV Zwickau | - | Werder Bremen II | 2:1 | ||||
| 31. Round | 04/04/2017 | Rot-Weiß Erfurt | - | Werder Bremen II | 1:1 | ||||
| 29. Round | 19/04/2017 | SV Wehen Wiesbaden | - | Werder Bremen II | 2:0 | |
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| 36. Round | 05/05/2017 | Werder Bremen II | - | Hallescher FC | 1:1 |
Senegal
France