| 1. Round | 05/08/2006 | Wycombe Wanderers | - | Wrexham FC | 1:1 | ||||
| 2. Round | 08/08/2006 | Wrexham FC | - | Grimsby Town | 3:0 | ||||
| 3. Round | 12/08/2006 | Wrexham FC | - | Peterborough United | 0:0 | ||||
| 4. Round | 20/08/2006 | Chester City | - | Wrexham FC | 1:2 |  |
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| 5. Round | 26/08/2006 | Wrexham FC | - | Barnet FC | 1:1 |  |
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| 7. Round | 09/09/2006 | Wrexham FC | - | Swindon Town | 2:1 | ||||
| 14. Round | 14/10/2006 | Wrexham FC | - | Milton Keynes Dons | 1:2 | |
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| 21. Round | 09/12/2006 | Boston United | - | Wrexham FC | 4:0 | ||||
| 32. Round | 10/02/2007 | Peterborough United | - | Wrexham FC | 3:0 | ||||
| 35. Round | 25/02/2007 | Wrexham FC | - | Shrewsbury Town | 1:3 | |
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| 36. Round | 03/03/2007 | Barnet FC | - | Wrexham FC | 1:2 | ||||
| 37. Round | 09/03/2007 | Wrexham FC | - | Bury FC | 1:1 | ||||
| 38. Round | 17/03/2007 | Milton Keynes Dons | - | Wrexham FC | 2:1 | ||||
| 39. Round | 24/03/2007 | Bristol Rovers | - | Wrexham FC | 0:1 | ||||
| 40. Round | 31/03/2007 | Wrexham FC | - | Mansfield Town | 0:0 | ||||
| 44. Round | 21/04/2007 | Wrexham FC | - | Torquay United | 1:0 | |
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| 6. Round | 24/04/2007 | Shrewsbury Town | - | Wrexham FC | 0:1 | ||||
| 45. Round | 28/04/2007 | Walsall FC | - | Wrexham FC | 1:0 | ||||
| 46. Round | 05/05/2007 | Wrexham FC | - | Boston United | 3:1 |
Wales