| Group A | 11/09/2016 | FBC Melgar | - | Deportivo Municipal | 2:1 | ||||
| Group A | 19/09/2016 | Real Garcilaso | - | FBC Melgar | 1:2 | ||||
| Group A | 25/09/2016 | FBC Melgar | - | Defensor La Bocana | 1:0 | ||||
| Group A | 28/09/2016 | Juan Aurich | - | FBC Melgar | 1:1 | ||||
| Group A | 24/10/2016 | FBC Melgar | - | Unión Comercio | 1:0 | ||||
| Group A | 02/11/2016 | FBC Melgar | - | Real Garcilaso | 0:0 | ||||
| Group A | 18/11/2016 | Defensor La Bocana | - | FBC Melgar | 1:3 |  |
|||
| Group A | 22/11/2016 | FBC Melgar | - | Juan Aurich | 1:2 |
Colombia
Mexico