| 26. Round | 11/01/2014 | Mansfield Town | - | Scunthorpe United | 0:2 |  |
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| 27. Round | 18/01/2014 | Scunthorpe United | - | AFC Wimbledon | 0:0 | ||||
| 28. Round | 25/01/2014 | Dagenham & Redbridge | - | Scunthorpe United | 3:3 | |
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| 29. Round | 27/01/2014 | Scunthorpe United | - | Fleetwood Town | 0:0 | ||||
| 30. Round | 01/02/2014 | Hartlepool United | - | Scunthorpe United | 0:0 | ||||
| 33. Round | 22/02/2014 | Scunthorpe United | - | Portsmouth FC | 5:1 | ||||
| 25. Round | 25/02/2014 | Scunthorpe United | - | Bristol Rovers | 1:1 | ||||
| 35. Round | 08/03/2014 | Scunthorpe United | - | Northampton Town | 1:1 | ||||
| 37. Round | 15/03/2014 | Plymouth Argyle | - | Scunthorpe United | 0:2 | ||||
| 38. Round | 22/03/2014 | Scunthorpe United | - | Burton Albion | 1:0 | ||||
| 39. Round | 25/03/2014 | Cheltenham Town | - | Scunthorpe United | 0:2 |  |
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| 40. Round | 29/03/2014 | Scunthorpe United | - | Wycombe Wanderers | 0:0 | ||||
| 41. Round | 05/04/2014 | Torquay United | - | Scunthorpe United | 0:1 | ||||
| 42. Round | 12/04/2014 | Scunthorpe United | - | Bury FC | 2:2 | |
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| 43. Round | 18/04/2014 | Morecambe FC | - | Scunthorpe United | 1:1 | ||||
| 45. Round | 26/04/2014 | Exeter City | - | Scunthorpe United | 2:0 |
England