| 3. Round | 30/03/2024 | FK Atyrau | - | Zhetysu Taldykorgan | 0:1 | ||||
| 4. Round | 07/04/2024 | FK Aktobe | - | FK Atyrau | 1:1 | ||||
| 5. Round | 20/04/2024 | Kaysar Kyzylorda | - | FK Atyrau | 1:1 |  |
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| 6. Round | 27/04/2024 | FK Atyrau | - | FK Kyzylzhar | 2:0 | ||||
| 7. Round | 04/05/2024 | FK Kairat | - | FK Atyrau | 1:0 | ||||
| 9. Round | 18/05/2024 | FK Atyrau | - | FK Astana | 1:0 | ||||
| 11. Round | 15/06/2024 | Shakter Karaganda | - | FK Atyrau | 0:3 | |
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| 12. Round | 23/06/2024 | FK Atyrau | - | Tobyl Kostanay | 0:0 |
Portugal