| 1. Round | 08/03/2013 | Bray Wanderers | - | Shelbourne FC | 1:0 |  |
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| 2. Round | 15/03/2013 | Shelbourne FC | - | Dundalk FC | 1:3 | ||||
| 4. Round | 24/03/2013 | Shelbourne FC | - | Shamrock Rovers | 0:0 | |
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| 5. Round | 29/03/2013 | Derry City | - | Shelbourne FC | 4:0 | |
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| 6. Round | 01/04/2013 | Shelbourne FC | - | Bohemian FC | 0:1 | ||||
| 7. Round | 06/04/2013 | Sligo Rovers | - | Shelbourne FC | 2:0 | ||||
| 8. Round | 12/04/2013 | Shelbourne FC | - | Drogheda United | 1:3 | ||||
| 3. Round | 15/04/2013 | St Patrick's Athletic | - | Shelbourne FC | 4:0 | ||||
| 9. Round | 19/04/2013 | Cork City | - | Shelbourne FC | 1:1 | |
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| 10. Round | 27/04/2013 | Limerick FC | - | Shelbourne FC | 0:0 |  |
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| 15. Round | 24/05/2013 | Shamrock Rovers | - | Shelbourne FC | 1:0 | |
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| 16. Round | 08/06/2013 | Shelbourne FC | - | Derry City | 0:1 | ||||
| 18. Round | 28/06/2013 | Shelbourne FC | - | Sligo Rovers | 0:2 | |
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| 19. Round | 07/07/2013 | Drogheda United | - | Shelbourne FC | 0:0 | |
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| 26. Round | 30/08/2013 | Shelbourne FC | - | Shamrock Rovers | 1:2 | ||||
| 30. Round | 30/09/2013 | Shelbourne FC | - | Drogheda United | 2:2 | ||||
| 27. Round | 04/10/2013 | Derry City | - | Shelbourne FC | 3:1 | |
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| 33. Round | 25/10/2013 | Shelbourne FC | - | UC Dublin | 1:2 |
Ireland