| 28. Round | 12/01/2013 | Plymouth Argyle | - | Morecambe FC | 2:1 | ||||
| 30. Round | 26/01/2013 | Plymouth Argyle | - | Accrington Stanley | 0:0 | ||||
| 31. Round | 02/02/2013 | Plymouth Argyle | - | Dagenham & Redbridge | 0:0 | ||||
| 33. Round | 16/02/2013 | Plymouth Argyle | - | Oxford United | 0:1 | ||||
| 34. Round | 23/02/2013 | Northampton Town | - | Plymouth Argyle | 1:0 | ||||
| 35. Round | 26/02/2013 | AFC Wimbledon | - | Plymouth Argyle | 1:1 | ||||
| 36. Round | 02/03/2013 | Plymouth Argyle | - | Barnet FC | 2:1 |  |
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| 37. Round | 09/03/2013 | Gillingham FC | - | Plymouth Argyle | 2:1 | ||||
| 29. Round | 19/03/2013 | Southend United | - | Plymouth Argyle | 0:2 | ||||
| 41. Round | 30/03/2013 | Plymouth Argyle | - | Exeter City | 1:0 | ||||
| 42. Round | 01/04/2013 | York City | - | Plymouth Argyle | 2:0 | ||||
| 43. Round | 06/04/2013 | Plymouth Argyle | - | Cheltenham Town | 2:0 | ||||
| 45. Round | 20/04/2013 | Plymouth Argyle | - | Rotherham United | 0:1 |
Ireland