| 1. Round | 04/10/2016 | NorthEast United FC | - | FC Goa | 2:0 | ||||
| 1. Round | 07/10/2016 | Mumbai City FC | - | NorthEast United FC | 1:0 | ||||
| 2. Round | 11/11/2016 | FC Goa | - | NorthEast United FC | 2:1 |  |
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| 2. Round | 17/11/2016 | Atlético de Kolkata | - | NorthEast United FC | 1:1 | ||||
| 2. Round | 22/11/2016 | NorthEast United FC | - | FC Pune City | 1:0 | ||||
| 2. Round | 26/11/2016 | Chennaiyin FC | - | NorthEast United FC | 3:3 | ||||
| 2. Round | 30/11/2016 | NorthEast United FC | - | Delhi Dynamos FC | 2:1 | |
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| 3. Round | 04/12/2016 | Kerala Blasters | - | NorthEast United FC | 1:0 |
India