| 1. Round | 20/02/2016 | Balzan FC | - | Pembroke Athleta FC | 2:1 |  |
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| 2. Round | 28/02/2016 | Pembroke Athleta FC | - | Birkirkara FC | 0:1 | ||||
| 3. Round | 02/03/2016 | Pembroke Athleta FC | - | Qormi FC | 3:1 | ||||
| 4. Round | 06/03/2016 | St. Andrews FC | - | Pembroke Athleta FC | 3:1 | ||||
| 5. Round | 13/03/2016 | Valletta FC | - | Pembroke Athleta FC | 2:0 | ||||
| 6. Round | 19/03/2016 | Pembroke Athleta FC | - | Hibernians FC | 1:1 | ||||
| 7. Round | 02/04/2016 | Pembroke Athleta FC | - | Sliema Wanderers | 0:2 | ||||
| 8. Round | 08/04/2016 | Naxxar Lions FC | - | Pembroke Athleta FC | 1:1 | ||||
| 9. Round | 16/04/2016 | Floriana FC | - | Pembroke Athleta FC | 2:3 | |
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| 10. Round | 23/04/2016 | Pembroke Athleta FC | - | Tarxien Rainbows | 0:4 | |
Malta