| 1. Round | 05/08/2006 | Southend United | - | Stoke City | 1:0 | ||||
| 2. Round | 08/08/2006 | Crystal Palace | - | Southend United | 3:1 | ||||
| 3. Round | 12/08/2006 | Queens Park Rangers | - | Southend United | 2:0 | ||||
| 4. Round | 19/08/2006 | Southend United | - | Sunderland AFC | 3:1 | ||||
| 5. Round | 26/08/2006 | Leicester City | - | Southend United | 1:0 | ||||
| 11. Round | 13/10/2006 | Southend United | - | Coventry City | 2:3 | ||||
| 12. Round | 17/10/2006 | Burnley FC | - | Southend United | 0:0 | ||||
| 16. Round | 04/11/2006 | Wolverhampton Wanderers | - | Southend United | 3:1 | ||||
| 17. Round | 11/11/2006 | Southend United | - | Preston North End | 0:0 |  |
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| 18. Round | 18/11/2006 | Southend United | - | Plymouth Argyle | 1:1 | ||||
| 19. Round | 25/11/2006 | Colchester United | - | Southend United | 3:0 | ||||
| 20. Round | 28/11/2006 | Barnsley FC | - | Southend United | 2:0 | ||||
| 21. Round | 02/12/2006 | Southend United | - | Wolverhampton Wanderers | 0:1 | ||||
| 22. Round | 09/12/2006 | Southend United | - | Southampton FC | 2:1 | ||||
| 23. Round | 15/12/2006 | Luton Town | - | Southend United | 0:0 | ||||
| 35. Round | 24/02/2007 | Sheffield Wednesday | - | Southend United | 3:2 | ||||
| 45. Round | 28/04/2007 | Southend United | - | Luton Town | 1:3 |
England