| 6. Round | 31/07/2016 | Boyacá Chicó | - | Deportes Tolima | 0:4 | ||||
| 7. Round | 06/08/2016 | Fortaleza FC | - | Boyacá Chicó | 2:1 | ||||
| 8. Round | 15/08/2016 | Boyacá Chicó | - | Atlético Nacional | 1:1 | ||||
| 9. Round | 20/08/2016 | Boyacá Chicó | - | Once Caldas | 2:1 |  |
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| 10. Round | 27/08/2016 | Patriotas FC | - | Boyacá Chicó | 1:0 | ||||
| 19. Round | 06/11/2016 | Independiente Medellín | - | Boyacá Chicó | 3:2 | |
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| 20. Round | 20/11/2016 | Boyacá Chicó | - | Patriotas FC | 1:2 |
Colombia