| 1. Round | 10/01/2016 | Shillong Lajong FC | - | Mumbai FC | 0:0 | ||||
| 3. Round | 24/01/2016 | Bengaluru FC | - | Shillong Lajong FC | 3:0 | ||||
| 4. Round | 28/01/2016 | Shillong Lajong FC | - | Salgaocar FC | 1:0 | ||||
| 5. Round | 31/01/2016 | Shillong Lajong FC | - | Sporting Goa | 1:0 | ||||
| 7. Round | 09/02/2016 | East Bengal FC | - | Shillong Lajong FC | 4:0 | ||||
| 8. Round | 13/02/2016 | Aizawl FC | - | Shillong Lajong FC | 0:0 | ||||
| 6. Round | 17/02/2016 | McDowell Mohun Bagan | - | Shillong Lajong FC | 1:1 | ||||
| 9. Round | 21/02/2016 | DSK Shivajians | - | Shillong Lajong FC | 1:1 | ||||
| 10. Round | 26/02/2016 | Shillong Lajong FC | - | DSK Shivajians | 1:1 | ||||
| 11. Round | 02/03/2016 | Shillong Lajong FC | - | Bengaluru FC | 0:2 |  |
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| 13. Round | 12/03/2016 | Salgaocar FC | - | Shillong Lajong FC | 1:0 | ||||
| 14. Round | 01/04/2016 | Shillong Lajong FC | - | Aizawl FC | 3:1 | ||||
| 15. Round | 05/04/2016 | Shillong Lajong FC | - | McDowell Mohun Bagan | 2:2 | ||||
| 16. Round | 10/04/2016 | Sporting Goa | - | Shillong Lajong FC | 5:2 | ||||
| 17. Round | 17/04/2016 | Mumbai FC | - | Shillong Lajong FC | 2:1 |
India