3. Round | 10/09/2016 | Valletta FC | - | Pembroke Athleta FC | 5:1 | ||||
4. Round | 17/09/2016 | Pembroke Athleta FC | - | Hibernians FC | 1:2 | ||||
5. Round | 22/09/2016 | Gżira United | - | Pembroke Athleta FC | 3:0 | ||||
6. Round | 26/09/2016 | Pembroke Athleta FC | - | Birkirkara FC | 2:1 | ||||
7. Round | 01/10/2016 | Pembroke Athleta FC | - | Tarxien Rainbows | 2:2 | ||||
8. Round | 16/10/2016 | St. Andrews FC | - | Pembroke Athleta FC | 4:1 | ||||
10. Round | 29/10/2016 | Hamrun Spartans | - | Pembroke Athleta FC | 2:1 | ||||
11. Round | 05/11/2016 | Mosta FC | - | Pembroke Athleta FC | 0:3 | ||||
12. Round | 20/11/2016 | Pembroke Athleta FC | - | Floriana FC | 1:2 | ||||
13. Round | 27/11/2016 | Balzan FC | - | Pembroke Athleta FC | 4:0 | ||||
14. Round | 03/12/2016 | Pembroke Athleta FC | - | Valletta FC | 0:3 | ||||
16. Round | 18/12/2016 | Pembroke Athleta FC | - | Gżira United | 0:0 | ||||
20. Round | 28/01/2017 | Pembroke Athleta FC | - | Hamrun Spartans | 1:0 | ||||
21. Round | 04/02/2017 | Sliema Wanderers | - | Pembroke Athleta FC | 1:1 |