| 1. Round | 04/10/2023 | Paphos FC [Youth] | - | MŠK Žilina [Youth] | 0:1 | ||||
| 1. Round | 25/10/2023 | MŠK Žilina [Youth] | - | Paphos FC [Youth] | 5:0 | ||||
| 2. Round | 08/11/2023 | AC Sparta Praha [Youth] | - | MŠK Žilina [Youth] | 2:2 | ||||
| 2. Round | 29/11/2023 | MŠK Žilina [Youth] | - | AC Sparta Praha [Youth] | 4:2 pso | ||||
| Play-offs | 07/02/2024 | MŠK Žilina [Youth] | - | Borussia Dortmund [Youth] | 2:1 | ||||
| Round of 16 | 27/02/2024 | MŠK Žilina [Youth] | - | FC København [Youth] | 2:4 pso |  |
Slovakia