| Group 3 | 25/02/2016 | Deportivo Cali | - | Boca Juniors | 0:0 | ||||
| Group 3 | 03/03/2016 | Boca Juniors | - | Racing Club | 0:0 | ||||
| Group 3 | 11/03/2016 | Bolívar | - | Boca Juniors | 1:1 | ||||
| Group 3 | 07/04/2016 | Boca Juniors | - | Bolívar | 3:1 | ||||
| Group 3 | 13/04/2016 | Racing Club | - | Boca Juniors | 0:1 |  |
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| Round of 16 | 29/04/2016 | Cerro Porteño | - | Boca Juniors | 1:2 | ||||
| Round of 16 | 06/05/2016 | Boca Juniors | - | Cerro Porteño | 3:1 | ||||
| Quarter-finals | 12/05/2016 | Nacional | - | Boca Juniors | 1:1 | ||||
| Quarter-finals | 20/05/2016 | Boca Juniors | - | Nacional | 4:3 pso | ||||
| Semi-finals | 08/07/2016 | Independiente del Valle | - | Boca Juniors | 2:1 | ||||
| Semi-finals | 15/07/2016 | Boca Juniors | - | Independiente del Valle | 2:3 |
Argentina